Software Engineer, Data Integration (Imaging Institute)

To develop a dynamic, integrated view of biological systems in health and disease, the Chan Zuckerberg Institute for Advanced Biological Imaging (CZ Imaging Institute) aims to push forward the development and application of new imaging technologies over the next 10 to 15 years. CZ Imaging Institute researchers will collaboratively develop breakthrough biological imaging systems centered around grand challenges that push the boundaries of what we can see and measure to obtain deep insights into the architecture of complex biological systems at the molecular level.

As an extension of the Chan Zuckerberg Initiative’s Imaging program, the CZ Imaging Institute (https://czii.org/) will create breakthrough technologies — hardware, software, biological probes, data, and platforms — that will be made available to the scientific community and adopted worldwide through a combination of direct access to the Institute, open sharing of advances, and commercial partnerships.

The Opportunity

To accomplish our mission, we need to develop a dynamic, integrated view of biological systems in health and disease. As an extension of the Chan Zuckerberg Initiative’s Imaging Program, the CZ Imaging Institute aims to push forward the development and application of new imaging technologies over the next 15 years to obtain deep insights into the architecture of complex biological systems at the molecular level. 

The CZ Imaging Institute will create breakthrough technologies — hardware, software, biological probes, data, and platforms — that will be made available to the scientific community and adopted worldwide through a combination of direct access to the institute, open sharing of advances, and commercial partnerships. Researchers will collaboratively develop breakthrough biological imaging systems centered around grand challenges that push the boundaries of what we can see and measure.

The Chan Zuckerberg Imaging Institute is seeking an experienced Software Engineer, Data Integration, to work under a technology team leader and collaborate in developing software that supports automation of the workflow for high-end microscopic instruments. Will work closely with researchers, scientists, and engineers developing novel approaches in cryoEM.

What You'll Do

• Perform core development of in-house software that tracks sample preparation, data acquisition, visualization, and analysis workflow across multiple imaging modalities.
• Develop a user interface to the workflow.
• Develop curation tools for the deposition of such data into the CryoET Data Portal for community use.
• Identify and implement steps of the workflow suitable for AI integration.
• Interact with software and data engineers from other CZ Science efforts in integrating data from different modalities.

What You'll Bring

Essential - 

• BS in Computer Science or a comparable/relevant degree
• 1-5 years of software development experience.
• Strong background in database design and architecture.
• Proficient in Python and JavaScript, with hands-on experience in front-end frameworks such as React and Next.js
• Familiarity with requirements for integrating web-based viewers for large scientific or medical images.
• Well developed analytical observation and software optimization skills.
• Deep understanding of software engineering principles and design patterns and how to apply them. 
• Excellent problem solving skills.
• Excellent communication skills.

Nice to have -

• Development and optimization in high-performance computing (HPC) environments.
• Knowledge of image formats and streaming methods (e.g., TIFF, Zarr pyramids) for efficient web delivery.
• Experience collaborating cross-functionally with scientists. 
• An interest in science and learning about biological imaging. 
• Experience in open source project.
• Diverse experience working with both desktop and web applications and understanding how they can interface with each other.

Compensation 

The Redwood City, CA base pay range for this role is Software Engineer I = $96,000.00 - $132,000.00 and Software Engineer II = $116,000.00 - $160,000.00.  New hires are typically hired into the lower portion of the range, enabling employee growth in the range over time. Actual placement in range is based on job-related skills and experience, as evaluated throughout the interview process. 

What We Provide

• Resources to collaboratively develop breakthrough biological imaging systems that push the boundaries of what we can see and measure
• An environment where nothing is considered impossible, where bold and creative thinking are the norm, and where a collaborative culture allows teams of people from multiple disciplines to accomplish more than any single person can achieve alone
• Access to collaborators and resources at partner organizations in the CZ Biohub Network and beyond
• Competitive compensation and benefits commensurate with experience

If you’re interested in a role but your previous experience doesn’t perfectly align with each qualification in the job description, we still encourage you to apply as you may be the perfect fit for this or another role.

Benefits

We offer a robust benefits program that enables the important work employees do everyday. Our benefits include healthcare coverage, life and disability insurance, commuter subsidies, family planning services with fertility care, childcare stipend, 401(k) match, flexible time off and a generous parental leave policy. In addition, we honor our commitment to career development and our value of scholarly excellence through regular onsite opportunities to learn from the world's leading scientists.

The CZ Biohub Network is an equal opportunity employer committed to diversity of thought, ideas and perspectives. We are committed to cultivating an inclusive organization where all employees feel inspired and know their work makes an important contribution. Therefore, we provide employment opportunities without regard to age, race, color, ancestry, national origin, religion, disability, sex, gender identity or expression, sexual orientation, or any other protected status in accordance with applicable law.

Pursuant to the California Fair Chance Act, we will consider for employment qualified applicants with arrest and conviction records.

Headhunters and recruitment agencies may not submit resumes/CVs through this website or directly to managers. The CZ Biohub Network does not accept unsolicited headhunter and agency resumes. The CZ Biohub Network will not pay fees to any third-party agency or company that does not have a signed agreement with the CZ Biohub Network.