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Senior/Staff Software Engineer

San Francisco, San Diego, or Remote

Atomwise is a TechBio company leveraging AI/ML to revolutionize small molecule drug discovery. The Atomwise team invented the use of deep learning for structure-based drug design; a core technology of Atomwise’s best-in-class AI discovery and optimization engine, which is differentiated by its ability to find and optimize novel chemical matter. The company’s belief is that structurally novel chemical matter increases the likelihood of developing first-in-class and best-in-class medicines that have the potential to transform patient care.

Atomwise has extensively tested its discovery and optimization engine, delivering hit ID success in over 230 academic and collaboration projects-to-date that cover a wide breadth of protein classes and numerous “hard-to-drug” targets. Atomwise is building a pipeline of small molecule drug candidates with first-in-class and best-in-class potential in immunology, including novel allosteric TYK2 inhibitors and IL-4Ra antagonists.

The company has raised over $174 million from leading venture capital firms to advance its vision to invent a better way to discover and develop new medicines to help patients.

About the role

Atomwise is seeking an experienced Senior/Staff Software Engineer with strong Python expertise to join our Engineering team. In this role, you will collaborate closely with our Machine Learning, Cheminformatics, and Drug Discovery teams to develop and implement software and services that drive innovation and accelerate our research.

Key Responsibilities

  • Software Development: Design, develop, and maintain robust, scalable, and efficient Python-based software solutions to support machine learning, cheminformatics, and drug discovery initiatives.
  • Service Implementation: Translate research ideas and proofs-of-concept into production services, ensuring seamless integration with existing systems and infrastructure.
  • Collaboration: Work closely with cross-functional teams, including Machine Learning Cheminformatics & Research and Drug Discovery, to understand their requirements and deliver impactful solutions.
  • Problem Solving: Apply your technical expertise and problem-solving skills to tackle complex technical and business challenges and drive innovation in the field of drug discovery.

Required Qualifications

  • Python Expertise: Extensive experience in Python programming, with a deep understanding of software engineering principles and best practices.
  • Problem Solving: Excellent problem-solving and analytical skills, with the ability to think creatively and develop innovative solutions.
  • Communication: Strong communication and interpersonal skills, with the ability to collaborate effectively with cross-functional teams.

Preferred Qualifications

  • Cloud Computing: Experience with cloud computing platforms (e.g., AWS, GCP, Azure) and cloud-native development practices.
  • Data Engineering: Experience with data engineering tools and techniques, including data pipelines, ETL processes, and data warehousing.
  • Drug Discovery: Familiarity with drug discovery processes and workflows, and experience working in a research environment.
  • Machine Learning: Familiarity with machine learning algorithms, frameworks, and tools, and experience applying them to real-world problems.
  • Cheminformatics: Knowledge of cheminformatics principles and techniques and experience working with chemical data and software tools.

Compensation & Benefits

  • Competitive salary, commensurate with experience
  • Stock compensation plan – you’ll be an Atomwise co-owner
  • Platinum health, dental, and vision benefits for you and your dependents
  • 401(k) retirement plan with generous company match (up to 4%)
  • Flexible paid time off (PTO), 13 paid holidays, and wellness breaks for employees to spend time with their loved ones and recharge
  • Health Savings and Flexible Spending Account options to help save money on healthcare, daycare, and commuting
  • Employee Assistance Program (EAP) and Pet Insurance
  • Funding for professional development and conference attendance
  • Flexible work schedule
  • Generous paid parental leave

Atomwise is an equal opportunity employer and strives to foster an inclusive workplace.  We are a TechBio company leveraging AI/ML to revolutionize small-molecule drug discovery, and we know that we need a diverse team to develop medicines that serve diverse populations.  Accordingly, Atomwise does not make any employment decisions (including but not limited to, hiring, compensation, and promotions) on the basis of race, religion, color, national origin, gender, gender identity, sexual orientation, age, veteran status, disability status, or any other characteristics protected by applicable federal, state, and local law.

We strongly encourage people of diverse backgrounds and perspectives to apply.

The base salary for this position is $135,000 - $210,000. Pay is determined by multiple factors including, but not limited to, a candidate's geographical location, experience and skills. 

 

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