Enterprise Applications Analyst

Who We Are

Flagship Pioneering is a biotechnology company that invents and builds platform companies that change the world. We bring together the greatest scientific minds with entrepreneurial company builders and assemble the capital to allow them to take courageous leaps. Those big leaps in human health and sustainability exponentially accelerate scientific progress in areas ranging from cancer detection and treatment to nature-positive agriculture.  

What sets Flagship apart is our ability to advance biotechnology by uniting life science innovation, company creation, and capital investment under one roof in a way that is largely without precedent. Our scientific founders, entrepreneurial leaders, and professional capital managers are each aligned around an institutionalized process that enables us to innovate and transform for the benefit of people and planet.  

Many of the companies Flagship has founded have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture. 

Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies, and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies.

THE ROLE 

We are seeking a detail-oriented Enterprise Applications Analyst to support the Enterprise Applications team in documenting, managing, optimizing, and evolving Flagship’s business systems landscape. This role will assist with operational support, requirements gathering, reporting, diagraming, and system improvements while also supporting architectural initiatives such as application evaluations, integration support, and documentation of system designs. 

The analyst will work closely with the Director of Enterprise Applications and cross-functional stakeholders to ensure systems such as UKG, NetSuite, Greenhouse, Cobblestone, Coupa, Notion, and ADP operate effectively and continue to align with business needs. 

This role bridges business operations and technical architecture, helping translate business requirements into system improvements and supporting the broader enterprise applications strategy. 

KEY RESPONSIBILITIES 

Business Analysis & Application Support 

• Support day-to-day operations and troubleshooting across enterprise applications including HCM, ERP, ATS, CLM, Procurement, and Payroll platforms.  

• Gather, document, and validate business requirements for system enhancements and integrations.  

• Partner with stakeholders across HR, Finance, Procurement, and IT to understand system needs and process improvements.  

• Assist with testing, configuration validation, and user acceptance testing for system changes and releases.  

• Provide end-user documentation, training, and ongoing support for enterprise systems.   

Architecture & System Design Support 

Assist the Director, Enterprise Applications with architecture and technical design activities, including: 

• Documenting system architectures, data flows, and integration patterns across enterprise platforms. 

• Supporting technical evaluations of new software requests using defined architecture criteria. 

• Assisting with system integration documentation and configuration validation. 

• Supporting integration development efforts using tools such as Workato or Power Platform. 

• Helping maintain architectural standards, system documentation, and technical diagrams. 

Professional Experience & Qualifications 

Required 

• Bachelor’s degree in Information Systems, Business, Computer Science, or related field. 

• 3+ years of experience in a Business Analyst, Systems Analyst, or Enterprise Applications support role. 

• Experience supporting enterprise SaaS platforms such as HCM, ERP, ATS, procurement, or finance systems. 

• Strong analytical and documentation skills. 

• Ability to translate business needs into system requirements. 

Preferred 

• Exposure to integration platforms such as Workato, Power Platform, or similar tools. 

• Familiarity with enterprise architecture concepts such as system integration, data governance, or application portfolio management. 

• SQL experience for data analysis or validation. 

• Experience supporting SaaS application ecosystems. 

ABOUT FLAGSHIP PIONEERING 

Flagship Pioneering invents and builds platform companies, each with the potential for multiple products that transform human health, sustainability and beyond. Since its launch in 2000, Flagship has originated more than 100 companies. Many of these companies have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture.   

Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. Learn more about Flagship at www.flagshippioneering.com. 

At Flagship, we accept impossible missions to enable bigger leaps. Our core values guide us through uncertainty and toward lasting impact. 

We are an equal opportunity employer. All qualified applicants will be considered for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law. 

We recognize that great candidates often bring unique strengths without fulfilling every qualification. If you have some of the experience listed above but not all, please apply anyway. We are dedicated to building diverse and inclusive teams and look forward to learning more about your background and interest in Flagship. 

Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto. 

#LI-NM1 

Flagship Pioneering and our ecosystem companies are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.

At Flagship, we recognize there is no perfect candidate. If you have some of the experience listed above but not all, please apply anyway. Experience comes in many forms, skills are transferable, and passion goes a long way. We are dedicated to building diverse and inclusive teams and look forward to learning more about your unique background.

Recruitment & Staffing Agencies:  Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates.  The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team.   Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto

#LI-NM1

The salary range for this role is $76,000 - $104,500. Compensation for the role will depend on a number of factors, including a candidate’s qualifications, skills, competencies, and experience. Flagship Pioneering currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on Flagship Pioneering's good faith estimate as of the date of publication and may be modified in the future.